STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ngly1N-glycanase 1. (639 aa)    
Predicted Functional Partners:
katnal2
Katanin catalytic subunit A1 like 2.
    
 0.995
psmc1
Proteasome 26S subunit, ATPase 1.
    
 0.989
rad23b
RAD23 homolog B, nucleotide excision repair protein.
    
 0.950
rad23a
RAD23 homolog A, nucleotide excision repair protein.
    
 0.950
LOC114662840
UV excision repair protein RAD23 homolog A-like.
    
 0.950
LOC114644895
UV excision repair protein RAD23 homolog B-like.
    
 0.950
derl1
Derlin 1.
    
 0.906
vcp
Valosin containing protein.
    
 0.902
LOC114667386
Transitional endoplasmic reticulum ATPase-like.
    
 0.902
spata5
Spermatogenesis associated 5.
    
 0.876
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.