STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase. (3588 aa)    
Predicted Functional Partners:
upf1
UPF1 RNA helicase and ATPase.
    
 0.997
mlst8
MTOR associated protein, LST8 homolog.
    
 0.992
smg7
SMG7 nonsense mediated mRNA decay factor.
   
 0.992
rptor
Regulatory associated protein of MTOR complex 1.
   
 0.992
mapkap1
MAPK associated protein 1.
    
 0.991
smg9
SMG9 nonsense mediated mRNA decay factor.
    
 0.991
smg8
SMG8 nonsense mediated mRNA decay factor.
   
 0.990
ENSECRP00000008397
annotation not available
   
 0.989
LOC114644347
Rapamycin-insensitive companion of mTOR-like.
   
 0.989
etf1
Eukaryotic translation termination factor 1.
    
 
 0.983
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.