STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ocel1occludin/ELL domain containing 1. (568 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
     
 0.937
cdk9
Cyclin dependent kinase 9.
    
 0.890
tjp1
Tight junction protein 1.
    
 0.859
marveld2
MARVEL domain containing 2.
  
  
 
0.850
tjp3
Tight junction protein 3.
    
 0.836
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.832
eaf1
ELL associated factor 1.
    
 0.809
eaf2
ELL associated factor 2.
    
 0.809
polr2j
RNA polymerase II subunit J.
    
  0.761
polr2k
RNA polymerase II subunit K.
    
  0.761
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.