STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stac2SH3 and cysteine rich domain 2. (350 aa)    
Predicted Functional Partners:
itsn2
Intersectin 2.
     
 0.982
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.920
arid4a
AT-rich interaction domain 4A.
    
 0.909
arid4b
AT-rich interaction domain 4B.
    
 0.909
dctn2
Dynactin subunit 2.
    
 0.802
ENSECRP00000033490
annotation not available
   
 0.798
smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
   
 0.794
dctn4
Dynactin subunit 4.
    
 0.794
dctn6
Dynactin subunit 6.
    
 0.793
pbrm1
Polybromo 1.
    
 0.791
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.