STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl6ip5ADP ribosylation factor like GTPase 6 interacting protein 5. (190 aa)    
Predicted Functional Partners:
slc1a1
Solute carrier family 1 member 1.
    
 
 0.629
tctex1d2
Tctex1 domain containing 2.
      
 0.549
derl1
Derlin 1.
   
   0.454
uba3
Ubiquitin like modifier activating enzyme 3.
      
 0.448
vamp4
Vesicle associated membrane protein 4.
      
 0.445
helz
Helicase with zinc finger.
      
 0.412
derl2
Derlin 2.
   
   0.400
derl3
Derlin 3.
   
   0.400
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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