STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114661977Tripartite motif-containing protein 16-like protein. (537 aa)    
Predicted Functional Partners:
ifih1
Interferon induced with helicase C domain 1.
    
  0.753
dhx58
DExH-box helicase 58.
    
  0.753
ENSECRP00000029180
annotation not available
    
 0.547
pea15
Proliferation and apoptosis adaptor protein 15.
    
 0.475
rps27a
Ribosomal protein S27a.
    
  0.473
gas7
Growth arrest specific 7.
    
  0.447
msto1
Misato mitochondrial distribution and morphology regulator 1.
      
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.