STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114643449Zinc finger protein 277-like. (276 aa)    
Predicted Functional Partners:
LOC114666877
Acyl-coenzyme A thioesterase 1-like.
    
  0.571
LOC114666829
Acyl-coenzyme A thioesterase 5-like.
    
  0.571
LOC114644519
Acyl-coenzyme A thioesterase 1-like.
    
  0.571
pdcd2l
Programmed cell death 2 like.
   
 
 0.534
LOC114659446
Bile acid-CoA:amino acid N-acyltransferase-like.
    
  0.495
LOC114659417
Acyl-coenzyme A thioesterase 4-like.
    
  0.495
rsrc2
Arginine and serine rich coiled-coil 2.
    
 
 0.490
orc3
Origin recognition complex subunit 3.
   
 
 0.470
pdcd2
Programmed cell death 2.
   
 
 0.468
gngt1
G protein subunit gamma transducin 1.
    
   0.450
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.