STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankdd1bAnkyrin repeat and death domain containing 1B. (581 aa)    
Predicted Functional Partners:
rnf146
Ring finger protein 146.
    
 0.838
axin1
Axin 1.
    
 0.795
axin2
Axin 2.
    
 0.795
sptbn4
Spectrin beta, non-erythrocytic 4.
   
 0.716
LOC114652128
Spectrin beta chain, non-erythrocytic 1-like.
   
 0.716
sptbn1
Spectrin beta, non-erythrocytic 1.
   
 0.716
LOC114666113
Spectrin beta chain, non-erythrocytic 1-like.
   
 0.716
ENSECRP00000029715
annotation not available
   
 0.716
ENSECRP00000029827
annotation not available
   
 0.716
LOC114666975
Spectrin beta chain, erythrocytic-like.
   
 0.716
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.