STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptgr2Prostaglandin reductase 2. (348 aa)    
Predicted Functional Partners:
fh
Fumarate hydratase.
   
  0.701
suclg1
succinate-CoA ligase alpha subunit.
   
 
  0.659
sdhb
Succinate dehydrogenase complex iron sulfur subunit B.
    
  0.651
dlx1
Distal-less homeobox 1.
  
  
 0.575
got2
Glutamic-oxaloacetic transaminase 2.
   
  0.564
sdha
Succinate dehydrogenase complex flavoprotein subunit A.
    
  0.553
sdhc
Succinate dehydrogenase complex subunit C.
    
  0.552
cat
Catalase.
  
  
 0.526
fah
Fumarylacetoacetate hydrolase.
    
  0.525
drosha
Drosha ribonuclease III.
   
 
  0.522
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.