STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhot1Ras homolog family member T1. (660 aa)    
Predicted Functional Partners:
pink1
PTEN induced kinase 1.
    
 0.930
ENSECRP00000030629
annotation not available
    
 0.930
ENSECRP00000030662
annotation not available
    
 0.930
itsn2
Intersectin 2.
    
 0.926
itsn1
Intersectin 1.
    
 0.893
LOC114656119
Thioredoxin domain-containing protein 3 homolog.
  
  0.861
LOC114661378
WD repeat-containing protein 90-like.
 
  
 0.854
ENSECRP00000022279
annotation not available
  
  
 
0.845
tomm20
Translocase of outer mitochondrial membrane 20.
    
 0.845
ENSECRP00000011256
annotation not available
   
 0.840
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.