STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt6tRNA methyltransferase 6. (476 aa)    
Predicted Functional Partners:
trmt61a
tRNA methyltransferase 61A.
   
 0.999
trmt61b
tRNA methyltransferase 61B.
   
 0.998
mettl1
Methyltransferase like 1.
   
 
 0.991
wdr4
WD repeat domain 4.
   
 0.982
trmt11
tRNA methyltransferase 11 homolog.
   
 0.980
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.976
ENSECRP00000009689
annotation not available
   
 
 0.970
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
 0.967
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
   
  
 0.936
wdr12
WD repeat domain 12.
   
    0.895
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.