STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stx12Syntaxin 12. (268 aa)    
Predicted Functional Partners:
ykt6
YKT6 v-SNARE homolog.
   
 0.991
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.991
vamp8
Vesicle associated membrane protein 8.
   
 0.988
vps16
VPS16 core subunit of CORVET and HOPS complexes.
    
 0.984
gosr1
Golgi SNAP receptor complex member 1.
   
 0.983
stx8
Syntaxin 8.
    
 0.980
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.975
vamp7
Vesicle associated membrane protein 7.
   
 0.972
vps11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.969
vamp4
Vesicle associated membrane protein 4.
   
 0.968
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.