STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114654098Hydroxylysine kinase-like. (205 aa)    
Predicted Functional Partners:
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.883
cth
Cystathionine gamma-lyase.
  
 
 0.823
got2
Glutamic-oxaloacetic transaminase 2.
  
 0.818
LOC114660415
5-phosphohydroxy-L-lysine phospho-lyase-like.
 
 0.806
adi1
Acireductone dioxygenase 1.
  
 
 0.795
aadat
Aminoadipate aminotransferase.
  
 0.794
kmo
Kynurenine 3-monooxygenase.
  
 
 0.791
kynu
Kynureninase.
  
 
 0.786
etnppl
Ethanolamine-phosphate phospho-lyase.
 
 0.786
tdo2
Tryptophan 2,3-dioxygenase.
  
 
 0.769
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.