STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114643470Cathepsin S-like. (216 aa)    
Predicted Functional Partners:
ctsw
Cathepsin W.
  
0.701
rps14
Ribosomal protein S14.
   
 0.699
LOC114663960
Progranulin-like.
   
 0.676
grn
Granulin precursor.
   
 0.676
ctso
Cathepsin O.
  
0.660
mrps11
Mitochondrial ribosomal protein S11.
   
 0.572
LOC114653391
Cathepsin L1-like.
  
  
 
0.551
agt
Angiotensinogen.
    
  0.512
psap
Prosaposin.
   
 
 0.491
tfg
Trafficking from ER to golgi regulator.
    
  0.466
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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