STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgrn1Mahogunin ring finger 1. (548 aa)    
Predicted Functional Partners:
ankrd46
Ankyrin repeat domain 46.
    
   0.678
atrnl1
Attractin like 1.
   
 
 0.659
atrn
Attractin.
   
 
 0.659
megf8
Multiple EGF like domains 8.
   
 
 0.659
tsg101
Tumor susceptibility 101.
    
 
 0.616
uba3
Ubiquitin like modifier activating enzyme 3.
     
 0.593
mc1r
Melanocortin 1 receptor.
    
 
 0.593
polr3e
RNA polymerase III subunit E.
      
 0.531
mrtfb
Myocardin related transcription factor B.
   
  
 0.446
elavl3
ELAV like RNA binding protein 3.
      
 0.438
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.