STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000025235annotation not available (325 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
 0.978
katnal2
Katanin catalytic subunit A1 like 2.
   
 0.953
ubxn6
UBX domain protein 6.
    
 0.919
ENSECRP00000030651
annotation not available
    
 0.913
ubxn8
UBX domain protein 8.
    
 0.910
spata5
Spermatogenesis associated 5.
   
 0.890
vcp
Valosin containing protein.
   
 0.890
LOC114667386
Transitional endoplasmic reticulum ATPase-like.
   
 0.890
spata5l1
Spermatogenesis associated 5 like 1.
   
 0.890
nvl
Nuclear VCP like.
   
 0.872
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.