STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vegfcVascular endothelial growth factor C. (407 aa)    
Predicted Functional Partners:
flt1
Fms related tyrosine kinase 1.
    
 0.972
pdgfrb
Platelet derived growth factor receptor beta.
    
 0.937
vegfb
Vascular endothelial growth factor B.
    
0.926
flt3
Fms related tyrosine kinase 3.
    
 0.923
pdgfra
Platelet derived growth factor receptor alpha.
    
 0.923
pdgfc
Platelet derived growth factor C.
     
 0.916
flt4
Fms related tyrosine kinase 4.
    
 0.914
kdr
Kinase insert domain receptor.
    
 0.914
LOC114662397
Vascular endothelial growth factor receptor kdr-like.
    
 0.914
tek
TEK receptor tyrosine kinase.
    
 0.912
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.