STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1146576655-hydroxytryptamine receptor 3A-like. (466 aa)    
Predicted Functional Partners:
LOC114645508
5-hydroxytryptamine receptor 3A-like.
    
0.873
grin1
Glutamate ionotropic receptor NMDA type subunit 1.
   
 
 0.777
abhd12
Abhydrolase domain containing 12.
    
  0.770
grid2
Glutamate ionotropic receptor delta type subunit 2.
    
  0.757
grid1
Glutamate ionotropic receptor delta type subunit 1.
    
  0.757
grin3a
Glutamate ionotropic receptor NMDA type subunit 3A.
     
 0.728
grin3b
Glutamate ionotropic receptor NMDA type subunit 3B.
     
 0.728
ENSECRP00000014350
annotation not available
   
 
  0.727
cacng4
Calcium voltage-gated channel auxiliary subunit gamma 4.
   
 
  0.727
olfm3
Olfactomedin 3.
   
 
  0.726
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.