STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch11G-patch domain containing 11. (260 aa)    
Predicted Functional Partners:
tep1
Telomerase associated protein 1.
   
 0.908
tep1-2
Telomerase associated protein 1.
   
 0.908
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.858
rbm17
RNA binding motif protein 17.
    
 
 0.759
sf3b4
Splicing factor 3b subunit 4.
    
 0.748
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.721
LOC114666740
Ubiquitin-like protein FUBI.
   
  0.721
ccdc130
Coiled-coil domain containing 130.
    
 0.715
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.711
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.700
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.