STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dffaDNA fragmentation factor subunit alpha. (316 aa)    
Predicted Functional Partners:
cenpu
Centromere protein U.
    
  0.831
casp3
Caspase 3.
    
  0.831
LOC114649895
Caspase-7-like.
    
  0.696
LOC114660594
Caspase-14-like.
    
  0.696
casp7
Caspase 7.
    
  0.696
cidec
Cell death inducing DFFA like effector c.
  
 
  0.693
ENSECRP00000012402
annotation not available
    
  0.649
casp6
Caspase 6.
    
  0.649
dffb
DNA fragmentation factor subunit beta.
    
 0.644
casp9
Caspase 9.
    
  0.630
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.