STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodalNodal growth differentiation factor. (391 aa)    
Predicted Functional Partners:
acvr1c
Activin A receptor type 1C.
    
 0.910
acvr1b
Activin A receptor type 1B.
    
 0.910
acvr2b
Activin A receptor type 2B.
    
 0.901
acvr2a
Activin A receptor type 2A.
    
 0.901
LOC114649327
Left-right determination factor 2-like.
   
 
0.881
ENSECRP00000000329
annotation not available
  
  
 
0.830
LOC114645458
Nodal homolog.
  
  
 
0.822
LOC114653642
TGF-beta receptor type-1-like.
    
 0.761
bmpr1b
Bone morphogenetic protein receptor type 1B.
    
 0.716
acvr1
Activin A receptor type 1.
    
 0.716
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.