STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114664140Casein kinase II subunit alpha. (392 aa)    
Predicted Functional Partners:
csnk2b
Casein kinase 2 beta.
   
 0.992
rrp7a
Ribosomal RNA processing 7 homolog A.
   
 0.974
kdm2a
Lysine demethylase 2A.
    
 0.952
fbxl19
F-box and leucine rich repeat protein 19.
    
 0.952
kdm2b
Lysine demethylase 2B.
    
 0.952
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
  0.952
utp18
UTP18 small subunit processome component.
    
 0.952
esf1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
  0.951
wdr46
WD repeat domain 46.
    
  0.947
utp11
UTP11 small subunit processome component.
   
  0.947
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.