STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660410LON peptidase N-terminal domain and RING finger protein 1-like. (576 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
  0.794
LOC114662601
Polyubiquitin-like.
    
 0.786
tp53bp1
Tumor protein p53 binding protein 1.
    
 0.728
ube2n
Ubiquitin conjugating enzyme E2 N.
    
 0.717
bard1
BRCA1 associated RING domain 1.
   
 0.652
brca1
BRCA1 DNA repair associated.
    
 0.641
fut8
Fucosyltransferase 8.
     
 0.621
ENSECRP00000001453
annotation not available
    
  0.619
ENSECRP00000013561
annotation not available
    
  0.619
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.619
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.