STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oscp1Organic solute carrier partner 1. (381 aa)    
Predicted Functional Partners:
wdr54
WD repeat domain 54.
    
   0.672
stk40
Serine/threonine kinase 40.
      
 0.558
arl14ep
ADP ribosylation factor like GTPase 14 effector protein.
      
 0.553
psmd3
Proteasome 26S subunit, non-ATPase 3.
      
 0.431
sgcb
Sarcoglycan beta.
      
 0.428
mrps15
Mitochondrial ribosomal protein S15.
      
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.