STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000026022annotation not available (466 aa)    
Predicted Functional Partners:
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
   
 0.999
ENSECRP00000004812
annotation not available
   
 0.992
ENSECRP00000004836
annotation not available
   
 0.992
nup93
Nucleoporin 93.
   
 0.986
nup133
Nucleoporin 133.
   
 0.985
nup54
Nucleoporin 54.
   
 0.984
nup107
Nucleoporin 107.
   
 0.984
nup98
Nucleoporin 98.
   
 0.984
nup85
Nucleoporin 85.
   
 0.982
seh1l
SEH1 like nucleoporin.
   
 0.982
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.