STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bloc1s5Biogenesis of lysosomal organelles complex 1 subunit 5. (154 aa)    
Predicted Functional Partners:
bloc1s1
Biogenesis of lysosomal organelles complex 1 subunit 1.
   
 0.990
bloc1s6
Biogenesis of lysosomal organelles complex 1 subunit 6.
    
 0.990
ENSECRP00000000006
annotation not available
    
 0.985
snapin
SNAP associated protein.
   
 0.978
LOC114663446
Biogenesis of lysosome-related organelles complex 1 subunit 4-like.
    
 0.978
hps3
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1.
     
 0.969
hps5
HPS5 biogenesis of lysosomal organelles complex 2 subunit 2.
     
 0.956
hps6
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3.
     
 0.954
dtnbp1
Dystrobrevin binding protein 1.
     
 0.942
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.936
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.