STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trnt1tRNA nucleotidyl transferase 1. (431 aa)    
Predicted Functional Partners:
tti1
TELO2 interacting protein 1.
    
 0.981
telo2
Telomere maintenance 2.
    
 0.969
ruvbl1
RuvB like AAA ATPase 1.
   
 0.931
pnpt1
Polyribonucleotide nucleotidyltransferase 1.
  
 0.908
apmap
Adipocyte plasma membrane associated protein.
  
 0.905
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.756
hlcs
Holocarboxylase synthetase.
  
  
 0.744
yars1
tyrosyl-tRNA synthetase 1.
  
 
 0.738
LOC114645520
Uncharacterized LOC114645520.
  
 0.710
dis3l2
DIS3 like 3'-5' exoribonuclease 2.
  
 0.710
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.