STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps19bp1Ribosomal protein S19 binding protein 1. (184 aa)    
Predicted Functional Partners:
sirt1
Sirtuin 1.
    
 0.912
rps19
Ribosomal protein S19.
    
 
 0.842
sirt5
Sirtuin 5.
    
 0.834
rps23
Ribosomal protein S23.
   
 
 0.833
wdr46
WD repeat domain 46.
   
 
 0.805
mphosph10
M-phase phosphoprotein 10.
    
 
 0.786
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
   0.773
rps3a
Ribosomal protein S3A.
    
 
 0.769
rrp7a
Ribosomal RNA processing 7 homolog A.
   
   0.748
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
   0.747
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.