STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660490Ganglioside GM2 activator-like. (201 aa)    
Predicted Functional Partners:
hexb
Hexosaminidase subunit beta.
    
 0.804
LOC114651962
Toll-like receptor 3.
    
 0.736
fam149b1
Family with sequence similarity 149 member B1.
    
 0.736
osbpl8
Oxysterol binding protein like 8.
      
 0.564
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
      
 0.561
etfa
Electron transfer flavoprotein subunit alpha.
      
 0.557
ENSECRP00000008400
annotation not available
      
 0.552
nt5e
5'-nucleotidase ecto.
     
 0.527
galns
Galactosamine (N-acetyl)-6-sulfatase.
      
 0.493
npc2
NPC intracellular cholesterol transporter 2.
   
  
 0.478
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.