STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ern1Endoplasmic reticulum to nucleus signaling 1. (972 aa)    
Predicted Functional Partners:
hspa5
Heat shock protein family A (Hsp70) member 5.
   
 0.996
ankrd45
Ankyrin repeat domain 45.
   
 0.982
rack1
Receptor for activated C kinase 1.
    
 0.940
xbp1
X-box binding protein 1.
    
 0.936
traf2
TNF receptor associated factor 2.
    
 0.929
LOC114657073
TNF receptor-associated factor 2-like.
    
 0.929
map3k5
Mitogen-activated protein kinase kinase kinase 5.
   
0.923
map3k6
Mitogen-activated protein kinase kinase kinase 6.
   
0.923
pop4
POP4 homolog, ribonuclease P/MRP subunit.
    
  0.902
pop1
POP1 homolog, ribonuclease P/MRP subunit.
    
  0.895
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.