STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efr3aEFR3 homolog A. (782 aa)    
Predicted Functional Partners:
ttc7a
Tetratricopeptide repeat domain 7A.
   
 
 0.794
pi4ka
Phosphatidylinositol 4-kinase alpha.
   
 
 0.785
ttc7b
Tetratricopeptide repeat domain 7B.
   
 
 0.754
fam126a
Family with sequence similarity 126 member A.
      
 0.558
tmem150a
Transmembrane protein 150A.
      
 0.541
rps3a
Ribosomal protein S3A.
    
 
 0.520
mcmdc2
Minichromosome maintenance domain containing 2.
   
 
  0.447
LOC114664303
arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like.
   
  
 0.416
pi4kb
Phosphatidylinositol 4-kinase beta.
      
 0.414
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.