LOC114667467 protein (Erpetoichthys calabaricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114667467

Nuclear receptor subfamily 5 group A member 2-like. (483 aa)

Predicted Functional Partners:

LOC114641412

0.936

nr0b2

0.880

ncoa1

0.808

ncoa2

0.808

ncoa3

0.808

ppargc1a

0.802

hoxb7

0.738

ctnnb1

0.701

jup

0.701

ube2i

0.686

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114641412	LOC114667467	ENSECRP00000026318	ENSECRP00000026606	Nuclear receptor subfamily 0 group B member 1-like.	Nuclear receptor subfamily 5 group A member 2-like.	0.936
LOC114641412	ncoa1	ENSECRP00000026318	ENSECRP00000006658	Nuclear receptor subfamily 0 group B member 1-like.	Nuclear receptor coactivator 1.	0.525
LOC114641412	ncoa2	ENSECRP00000026318	ENSECRP00000009178	Nuclear receptor subfamily 0 group B member 1-like.	Nuclear receptor coactivator 2.	0.577
LOC114641412	ncoa3	ENSECRP00000026318	ENSECRP00000033920	Nuclear receptor subfamily 0 group B member 1-like.	Nuclear receptor coactivator 3.	0.525
LOC114641412	ppargc1a	ENSECRP00000026318	ENSECRP00000004191	Nuclear receptor subfamily 0 group B member 1-like.	PPARG coactivator 1 alpha.	0.482
LOC114667467	LOC114641412	ENSECRP00000026606	ENSECRP00000026318	Nuclear receptor subfamily 5 group A member 2-like.	Nuclear receptor subfamily 0 group B member 1-like.	0.936
LOC114667467	ctnnb1	ENSECRP00000026606	ENSECRP00000025072	Nuclear receptor subfamily 5 group A member 2-like.	Catenin beta 1.	0.701
LOC114667467	hoxb7	ENSECRP00000026606	ENSECRP00000032938	Nuclear receptor subfamily 5 group A member 2-like.	Homeobox B7.	0.738
LOC114667467	jup	ENSECRP00000026606	ENSECRP00000029116	Nuclear receptor subfamily 5 group A member 2-like.	Junction plakoglobin.	0.701
LOC114667467	ncoa1	ENSECRP00000026606	ENSECRP00000006658	Nuclear receptor subfamily 5 group A member 2-like.	Nuclear receptor coactivator 1.	0.808
LOC114667467	ncoa2	ENSECRP00000026606	ENSECRP00000009178	Nuclear receptor subfamily 5 group A member 2-like.	Nuclear receptor coactivator 2.	0.808
LOC114667467	ncoa3	ENSECRP00000026606	ENSECRP00000033920	Nuclear receptor subfamily 5 group A member 2-like.	Nuclear receptor coactivator 3.	0.808
LOC114667467	nr0b2	ENSECRP00000026606	ENSECRP00000026989	Nuclear receptor subfamily 5 group A member 2-like.	Nuclear receptor subfamily 0 group B member 2.	0.880
LOC114667467	ppargc1a	ENSECRP00000026606	ENSECRP00000004191	Nuclear receptor subfamily 5 group A member 2-like.	PPARG coactivator 1 alpha.	0.802
LOC114667467	ube2i	ENSECRP00000026606	ENSECRP00000018709	Nuclear receptor subfamily 5 group A member 2-like.	Ubiquitin conjugating enzyme E2 I.	0.686
ctnnb1	LOC114667467	ENSECRP00000025072	ENSECRP00000026606	Catenin beta 1.	Nuclear receptor subfamily 5 group A member 2-like.	0.701
ctnnb1	jup	ENSECRP00000025072	ENSECRP00000029116	Catenin beta 1.	Junction plakoglobin.	0.993
hoxb7	LOC114667467	ENSECRP00000032938	ENSECRP00000026606	Homeobox B7.	Nuclear receptor subfamily 5 group A member 2-like.	0.738
jup	LOC114667467	ENSECRP00000029116	ENSECRP00000026606	Junction plakoglobin.	Nuclear receptor subfamily 5 group A member 2-like.	0.701
jup	ctnnb1	ENSECRP00000029116	ENSECRP00000025072	Junction plakoglobin.	Catenin beta 1.	0.993