STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc2a11Solute carrier family 2 member 11. (506 aa)    
Predicted Functional Partners:
LOC114648548
Cytochrome b5 reductase 4.
  
  0.825
ENSECRP00000004184
annotation not available
  
 
 0.670
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.626
ENSECRP00000014714
annotation not available
   
 0.626
LOC114667591
Glyceraldehyde-3-phosphate dehydrogenase 2.
   
 0.626
slc22a13
Solute carrier family 22 member 13.
  
 
 0.614
tk1
Thymidine kinase 1.
     
 0.606
tp53
Tumor protein p53.
    
 0.603
slc2a5
Solute carrier family 2 member 5.
  
  
 
0.595
tyms
Thymidylate synthetase.
  
 
  0.589
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.