STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tchpTrichoplein keratin filament binding. (499 aa)    
Predicted Functional Partners:
cep164
Centrosomal protein 164.
   
  0.804
mdm2
MDM2 proto-oncogene.
     
 0.788
cenpf
Centromere protein F.
   
 
 0.759
mdm4
MDM4 regulator of p53.
     
 0.728
odf2
Outer dense fiber of sperm tails 2.
    
  0.724
odf2l
Outer dense fiber of sperm tails 2 like.
    
  0.724
lcat
Lecithin-cholesterol acyltransferase.
   
 
 0.705
pla2g15
Phospholipase A2 group XV.
   
 
 0.705
lypla1
Lysophospholipase 1.
     
 0.690
lypla2
Lysophospholipase 2.
     
 0.690
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.