STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmcd1LIM and cysteine rich domains 1. (339 aa)    
Predicted Functional Partners:
gata6
GATA binding protein 6.
    
 0.751
gata4
GATA binding protein 4.
    
 0.704
gata5
GATA binding protein 5.
    
 0.704
vangl1
VANGL planar cell polarity protein 1.
    
 0.692
vangl2
VANGL planar cell polarity protein 2.
    
 0.692
LOC114661326
GATA-binding factor 2-like.
    
 0.679
dvl3
Dishevelled segment polarity protein 3.
    
 0.661
dvl1
Dishevelled segment polarity protein 1.
    
 0.661
dvl2
Dishevelled segment polarity protein 2.
    
 0.661
afdn
Afadin, adherens junction formation factor.
    
 0.620
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.