STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114666740Ubiquitin-like protein FUBI. (133 aa)    
Predicted Functional Partners:
rps5
Ribosomal protein S5.
   
 0.999
LOC114651820
60S ribosomal protein L5-like.
   
 0.999
ENSECRP00000001055
annotation not available
   
 0.999
mrpl24
Mitochondrial ribosomal protein L24.
   
 0.999
ENSECRP00000001453
annotation not available
   
 0.999
ENSECRP00000001598
annotation not available
   
 0.999
mrps10
Mitochondrial ribosomal protein S10.
   
 0.999
ENSECRP00000002588
annotation not available
   
 0.999
rps3
Ribosomal protein S3.
   
 0.999
dock4
Dedicator of cytokinesis 4.
   
 0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.