STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtf3c3General transcription factor IIIC subunit 3. (879 aa)    
Predicted Functional Partners:
gtf3c5
General transcription factor IIIC subunit 5.
   
 0.999
brf1
BRF1 RNA polymerase III transcription initiation factor subunit.
    
 0.999
brf2
BRF2 RNA polymerase III transcription initiation factor subunit.
    
 0.996
gtf3c1
General transcription factor IIIC subunit 1.
    
 0.993
gtf3c2
General transcription factor IIIC subunit 2.
    
 0.992
polr3d
RNA polymerase III subunit D.
    
 0.991
gtf3c4
General transcription factor IIIC subunit 4.
   
 0.989
cpsf2
Cleavage and polyadenylation specific factor 2.
    
   0.977
cpsf1
Cleavage and polyadenylation specific factor 1.
    
   0.976
LOC114646967
DNA-directed RNA polymerase III subunit RPC4-like.
    
 0.974
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.