STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvssaUV stimulated scaffold protein A. (738 aa)    
Predicted Functional Partners:
usp7
Ubiquitin specific peptidase 7.
    
 0.996
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 
 0.976
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.958
ercc6
ERCC excision repair 6, chromatin remodeling factor.
    
 
 0.912
gtf2h1
General transcription factor IIH subunit 1.
    
 
 0.906
usp40
Ubiquitin specific peptidase 40.
    
 0.895
ddb1
Damage specific DNA binding protein 1.
    
 
 0.865
polr2a
RNA polymerase II subunit A.
    
 
 0.818
wdr61
WD repeat domain 61.
    
 
 0.817
polr2f
RNA polymerase II subunit F.
    
 
 0.785
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.