STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mosmoModulator of smoothened. (167 aa)    
Predicted Functional Partners:
smo
Smoothened, frizzled class receptor.
     
 0.856
plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.700
plod3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.700
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.700
ogfod2
2-oxoglutarate and iron dependent oxygenase domain containing 2.
   
 0.700
rnf157
Ring finger protein 157.
      
 0.573
fam20b
FAM20B glycosaminoglycan xylosylkinase.
      
 0.540
setd5
SET domain containing 5.
      
 0.529
ENSECRP00000027597
annotation not available
 
    
 0.515
tlcd3b
TLC domain containing 3B.
   
  
 0.423
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.