STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcor1REST corepressor 1. (456 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
   
  0.980
arid4b
AT-rich interaction domain 4B.
   
  0.980
kdm1a
Lysine demethylase 1A.
    
 0.977
rest
RE1 silencing transcription factor.
    
 0.915
hdac1
Histone deacetylase 1.
    
 0.914
phf21a
PHD finger protein 21A.
   
 0.900
hmg20b
High mobility group 20B.
   
 0.868
kdm1b
Lysine demethylase 1B.
   
 0.862
LOC114655413
Probable flavin-containing monoamine oxidase A.
    
 0.851
LOC114650247
Amine oxidase [flavin-containing]-like.
    
 0.851
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.