STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114641485Histone-binding protein RBBP7. (436 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
   
 0.997
arid4b
AT-rich interaction domain 4B.
   
 0.997
suz12
SUZ12 polycomb repressive complex 2 subunit.
    
 0.989
eed
Embryonic ectoderm development.
   
 0.987
hat1
Histone acetyltransferase 1.
   
 0.984
morf4l1
Mortality factor 4 like 1.
   
 0.984
chaf1b
Chromatin assembly factor 1 subunit B.
   
 0.980
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.978
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.978
ENSECRP00000016153
annotation not available
    
 0.976
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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