STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114663633Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein. (402 aa)    
Predicted Functional Partners:
syvn1
Synoviolin 1.
   
 
 0.577
atf4
Activating transcription factor 4.
   
 
 0.575
amfr
Autocrine motility factor receptor.
   
 
 0.570
atf5
Activating transcription factor 5.
   
 
 0.500
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.452
fam8a1
Family with sequence similarity 8 member A1.
    
 
 0.442
LOC114651654
RING finger protein 145-like.
    
 
 0.420
rnf145
Ring finger protein 145.
    
 
 0.420
edem1
ER degradation enhancing alpha-mannosidase like protein 1.
      
 0.418
rnf139
Ring finger protein 139.
    
 
 0.409
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.