STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyl1LYL1 basic helix-loop-helix family member. (397 aa)    
Predicted Functional Partners:
tcf4
Transcription factor 4.
    
 0.864
tcf3
Transcription factor 3.
    
 0.864
tcf12
Transcription factor 12.
    
 0.864
lmo2
LIM domain only 2.
   
 0.745
ldb1
LIM domain binding 1.
    
 0.743
cbfb
Core-binding factor subunit beta.
     
 0.728
ldb2
LIM domain binding 2.
    
 0.718
runx1
RUNX family transcription factor 1.
    
 0.711
ep300
E1A binding protein p300.
    
 0.665
LOC114661326
GATA-binding factor 2-like.
   
 0.633
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.