STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpy19l1Dpy-19 like C-mannosyltransferase 1. (726 aa)    
Predicted Functional Partners:
ENSECRP00000008212
annotation not available
   
    0.717
spata16
Spermatogenesis associated 16.
      
 0.557
pick1
Protein interacting with PRKCA 1.
      
 0.545
gopc
Golgi associated PDZ and coiled-coil motif containing.
      
 0.465
unc5a
Unc-5 netrin receptor A.
    
 
 0.435
tsr3
TSR3 ribosome maturation factor.
      
 0.428
agfg1
ArfGAP with FG repeats 1.
      
 0.428
tsr2
TSR2 ribosome maturation factor.
      
 0.414
ccdc92b
Coiled-coil domain containing 92B.
      
 0.410
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.