STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps16VPS16 core subunit of CORVET and HOPS complexes. (821 aa)    
Predicted Functional Partners:
tgfbrap1
Transforming growth factor beta receptor associated protein 1.
   
 0.999
vps41
VPS41 subunit of HOPS complex.
    
 0.999
vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 0.999
vps39
VPS39 subunit of HOPS complex.
   
 0.999
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
vps33a
VPS33A core subunit of CORVET and HOPS complexes.
   
 0.999
vps33b
VPS33B late endosome and lysosome associated.
   
 0.997
stx17
Syntaxin 17.
    
 0.993
vamp7
Vesicle associated membrane protein 7.
    
 0.992
ENSECRP00000011395
annotation not available
    
 0.989
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.