STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000028486annotation not available (435 aa)    
Predicted Functional Partners:
agrn
Agrin.
    
 0.891
dkk1
Dickkopf WNT signaling pathway inhibitor 1.
    
 0.843
ENSECRP00000006786
annotation not available
 
   
  0.823
lrpap1
LDL receptor related protein associated protein 1.
    
 0.819
apoe
Apolipoprotein E.
    
 0.805
ENSECRP00000022214
annotation not available
    
 0.797
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.765
reln
Reelin.
    
 0.750
shh
Sonic hedgehog signaling molecule.
     
 0.732
ihh
Indian hedgehog signaling molecule.
     
 0.728
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.