STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000028587annotation not available (1035 aa)    
Predicted Functional Partners:
LOC114647098
Ras-related protein Rab-4B.
    
 0.660
ENSECRP00000012778
annotation not available
   
 0.608
micu1
Mitochondrial calcium uptake 1.
   
 0.608
rab7b
RAB7B, member RAS oncogene family.
     
 0.596
vps28
VPS28 subunit of ESCRT-I.
    
 0.594
chmp2a
Charged multivesicular body protein 2A.
     
 0.573
vps36
Vacuolar protein sorting 36 homolog.
     
 0.567
phb2
Prohibitin 2.
    
  0.559
ENSECRP00000012383
annotation not available
     
 0.557
smdt1
Single-pass membrane protein with aspartate rich tail 1.
     
 0.557
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.