STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660436Polyubiquitin-like. (90 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.994
ubxn7
UBX domain protein 7.
    
 0.992
ube2v1
Ubiquitin conjugating enzyme E2 V1.
   
 0.981
trip12
Thyroid hormone receptor interactor 12.
   
 0.958
nbr1
NBR1 autophagy cargo receptor.
   
 0.932
traf7
TNF receptor associated factor 7.
    
 0.928
rps24
Ribosomal protein S24.
   
 0.907
rps18
Ribosomal protein S18.
   
 0.904
rps3a
Ribosomal protein S3A.
   
  0.902
rpl19
Ribosomal protein L19.
   
 0.902
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.