STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpraSRP receptor subunit alpha. (638 aa)    
Predicted Functional Partners:
srprb
SRP receptor subunit beta.
   
 0.999
srp54
Signal recognition particle 54.
  
0.999
srp72
Signal recognition particle 72.
   
 0.982
srp68
Signal recognition particle 68.
   
 0.981
rpl23a
Ribosomal protein L23a.
  
 
 0.979
sec61a2
SEC61 translocon alpha 2 subunit.
  
 0.975
LOC114668865
Protein transport protein Sec61 subunit alpha-like 1.
  
 0.975
srp19
Signal recognition particle 19.
   
 
 0.974
rpl11
Ribosomal protein L11.
   
 
 0.971
rpl23
Ribosomal protein L23.
   
 
 0.962
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.