STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114664777Platelet endothelial cell adhesion molecule-like. (725 aa)    
Predicted Functional Partners:
cdh5
Cadherin 5.
   
 0.961
ctnnb1
Catenin beta 1.
   
 0.960
jup
Junction plakoglobin.
   
 0.920
ptpn6
Protein tyrosine phosphatase non-receptor type 6.
   
 0.889
LOC114656302
Tyrosine-protein phosphatase non-receptor type 11-like.
   
 0.888
ptpn11
Protein tyrosine phosphatase non-receptor type 11.
   
 0.888
inpp5d
Inositol polyphosphate-5-phosphatase D.
    
 0.785
flt1
Fms related tyrosine kinase 1.
   
 0.776
flt4
Fms related tyrosine kinase 4.
   
 0.776
kdr
Kinase insert domain receptor.
   
 0.776
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.